This is the function to format the bounds summary table of fixed design into gt style.
Source:R/as_gt.R
as_gt.fixed_design.RdThis is the function to format the bounds summary table of fixed design into gt style.
Usage
# S3 method for fixed_design
as_gt(x, title = NULL, footnote = NULL, ...)Arguments
- x
a summary object of group sequential design
- title
title to be displayed
- footnote
footnotes to be displayed
- ...
additional arguments
Examples
library(dplyr)
#>
#> Attaching package: ‘dplyr’
#> The following objects are masked from ‘package:stats’:
#>
#> filter, lag
#> The following objects are masked from ‘package:base’:
#>
#> intersect, setdiff, setequal, union
library(tibble)
# Enrollment rate
enrollRates <- tibble(
Stratum = "All",
duration = 18,
rate = 20)
# Failure rates
failRates <- tibble(
Stratum = "All",
duration = c(4, 100),
failRate = log(2) / 12,
hr = c(1, .6),
dropoutRate = .001)
# Study duration in months
studyDuration <- 36
# Experimental / Control randomization ratio
ratio <- 1
# 1-sided Type I error
alpha <- 0.025
# Type II error (1 - power)
beta <- 0.1
# ------------------------- #
# AHR #
# ------------------------- #
# under fixed power
fixed_design(
x = "AHR",
alpha = alpha, power = 1 - beta,
enrollRates = enrollRates, failRates = failRates,
studyDuration = studyDuration, ratio = ratio
) %>%
summary() %>%
as_gt()
#> <div id="xcqmhqajet" style="overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
#> <style>html {
#> font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI', Roboto, Oxygen, Ubuntu, Cantarell, 'Helvetica Neue', 'Fira Sans', 'Droid Sans', Arial, sans-serif;
#> }
#>
#> #xcqmhqajet .gt_table {
#> display: table;
#> border-collapse: collapse;
#> margin-left: auto;
#> margin-right: auto;
#> color: #333333;
#> font-size: 16px;
#> font-weight: normal;
#> font-style: normal;
#> background-color: #FFFFFF;
#> width: auto;
#> border-top-style: solid;
#> border-top-width: 2px;
#> border-top-color: #A8A8A8;
#> border-right-style: none;
#> border-right-width: 2px;
#> border-right-color: #D3D3D3;
#> border-bottom-style: solid;
#> border-bottom-width: 2px;
#> border-bottom-color: #A8A8A8;
#> border-left-style: none;
#> border-left-width: 2px;
#> border-left-color: #D3D3D3;
#> }
#>
#> #xcqmhqajet .gt_heading {
#> background-color: #FFFFFF;
#> text-align: center;
#> border-bottom-color: #FFFFFF;
#> border-left-style: none;
#> border-left-width: 1px;
#> border-left-color: #D3D3D3;
#> border-right-style: none;
#> border-right-width: 1px;
#> border-right-color: #D3D3D3;
#> }
#>
#> #xcqmhqajet .gt_title {
#> color: #333333;
#> font-size: 125%;
#> font-weight: initial;
#> padding-top: 4px;
#> padding-bottom: 4px;
#> padding-left: 5px;
#> padding-right: 5px;
#> border-bottom-color: #FFFFFF;
#> border-bottom-width: 0;
#> }
#>
#> #xcqmhqajet .gt_subtitle {
#> color: #333333;
#> font-size: 85%;
#> font-weight: initial;
#> padding-top: 0;
#> padding-bottom: 6px;
#> padding-left: 5px;
#> padding-right: 5px;
#> border-top-color: #FFFFFF;
#> border-top-width: 0;
#> }
#>
#> #xcqmhqajet .gt_bottom_border {
#> border-bottom-style: solid;
#> border-bottom-width: 2px;
#> border-bottom-color: #D3D3D3;
#> }
#>
#> #xcqmhqajet .gt_col_headings {
#> border-top-style: solid;
#> border-top-width: 2px;
#> border-top-color: #D3D3D3;
#> border-bottom-style: solid;
#> border-bottom-width: 2px;
#> border-bottom-color: #D3D3D3;
#> border-left-style: none;
#> border-left-width: 1px;
#> border-left-color: #D3D3D3;
#> border-right-style: none;
#> border-right-width: 1px;
#> border-right-color: #D3D3D3;
#> }
#>
#> #xcqmhqajet .gt_col_heading {
#> color: #333333;
#> background-color: #FFFFFF;
#> font-size: 100%;
#> font-weight: normal;
#> text-transform: inherit;
#> border-left-style: none;
#> border-left-width: 1px;
#> border-left-color: #D3D3D3;
#> border-right-style: none;
#> border-right-width: 1px;
#> border-right-color: #D3D3D3;
#> vertical-align: bottom;
#> padding-top: 5px;
#> padding-bottom: 6px;
#> padding-left: 5px;
#> padding-right: 5px;
#> overflow-x: hidden;
#> }
#>
#> #xcqmhqajet .gt_column_spanner_outer {
#> color: #333333;
#> background-color: #FFFFFF;
#> font-size: 100%;
#> font-weight: normal;
#> text-transform: inherit;
#> padding-top: 0;
#> padding-bottom: 0;
#> padding-left: 4px;
#> padding-right: 4px;
#> }
#>
#> #xcqmhqajet .gt_column_spanner_outer:first-child {
#> padding-left: 0;
#> }
#>
#> #xcqmhqajet .gt_column_spanner_outer:last-child {
#> padding-right: 0;
#> }
#>
#> #xcqmhqajet .gt_column_spanner {
#> border-bottom-style: solid;
#> border-bottom-width: 2px;
#> border-bottom-color: #D3D3D3;
#> vertical-align: bottom;
#> padding-top: 5px;
#> padding-bottom: 5px;
#> overflow-x: hidden;
#> display: inline-block;
#> width: 100%;
#> }
#>
#> #xcqmhqajet .gt_group_heading {
#> padding-top: 8px;
#> padding-bottom: 8px;
#> padding-left: 5px;
#> padding-right: 5px;
#> color: #333333;
#> background-color: #FFFFFF;
#> font-size: 100%;
#> font-weight: initial;
#> text-transform: inherit;
#> border-top-style: solid;
#> border-top-width: 2px;
#> border-top-color: #D3D3D3;
#> border-bottom-style: solid;
#> border-bottom-width: 2px;
#> border-bottom-color: #D3D3D3;
#> border-left-style: none;
#> border-left-width: 1px;
#> border-left-color: #D3D3D3;
#> border-right-style: none;
#> border-right-width: 1px;
#> border-right-color: #D3D3D3;
#> vertical-align: middle;
#> }
#>
#> #xcqmhqajet .gt_empty_group_heading {
#> padding: 0.5px;
#> color: #333333;
#> background-color: #FFFFFF;
#> font-size: 100%;
#> font-weight: initial;
#> border-top-style: solid;
#> border-top-width: 2px;
#> border-top-color: #D3D3D3;
#> border-bottom-style: solid;
#> border-bottom-width: 2px;
#> border-bottom-color: #D3D3D3;
#> vertical-align: middle;
#> }
#>
#> #xcqmhqajet .gt_from_md > :first-child {
#> margin-top: 0;
#> }
#>
#> #xcqmhqajet .gt_from_md > :last-child {
#> margin-bottom: 0;
#> }
#>
#> #xcqmhqajet .gt_row {
#> padding-top: 8px;
#> padding-bottom: 8px;
#> padding-left: 5px;
#> padding-right: 5px;
#> margin: 10px;
#> border-top-style: solid;
#> border-top-width: 1px;
#> border-top-color: #D3D3D3;
#> border-left-style: none;
#> border-left-width: 1px;
#> border-left-color: #D3D3D3;
#> border-right-style: none;
#> border-right-width: 1px;
#> border-right-color: #D3D3D3;
#> vertical-align: middle;
#> overflow-x: hidden;
#> }
#>
#> #xcqmhqajet .gt_stub {
#> color: #333333;
#> background-color: #FFFFFF;
#> font-size: 100%;
#> font-weight: initial;
#> text-transform: inherit;
#> border-right-style: solid;
#> border-right-width: 2px;
#> border-right-color: #D3D3D3;
#> padding-left: 5px;
#> padding-right: 5px;
#> }
#>
#> #xcqmhqajet .gt_stub_row_group {
#> color: #333333;
#> background-color: #FFFFFF;
#> font-size: 100%;
#> font-weight: initial;
#> text-transform: inherit;
#> border-right-style: solid;
#> border-right-width: 2px;
#> border-right-color: #D3D3D3;
#> padding-left: 5px;
#> padding-right: 5px;
#> vertical-align: top;
#> }
#>
#> #xcqmhqajet .gt_row_group_first td {
#> border-top-width: 2px;
#> }
#>
#> #xcqmhqajet .gt_summary_row {
#> color: #333333;
#> background-color: #FFFFFF;
#> text-transform: inherit;
#> padding-top: 8px;
#> padding-bottom: 8px;
#> padding-left: 5px;
#> padding-right: 5px;
#> }
#>
#> #xcqmhqajet .gt_first_summary_row {
#> border-top-style: solid;
#> border-top-color: #D3D3D3;
#> }
#>
#> #xcqmhqajet .gt_first_summary_row.thick {
#> border-top-width: 2px;
#> }
#>
#> #xcqmhqajet .gt_last_summary_row {
#> padding-top: 8px;
#> padding-bottom: 8px;
#> padding-left: 5px;
#> padding-right: 5px;
#> border-bottom-style: solid;
#> border-bottom-width: 2px;
#> border-bottom-color: #D3D3D3;
#> }
#>
#> #xcqmhqajet .gt_grand_summary_row {
#> color: #333333;
#> background-color: #FFFFFF;
#> text-transform: inherit;
#> padding-top: 8px;
#> padding-bottom: 8px;
#> padding-left: 5px;
#> padding-right: 5px;
#> }
#>
#> #xcqmhqajet .gt_first_grand_summary_row {
#> padding-top: 8px;
#> padding-bottom: 8px;
#> padding-left: 5px;
#> padding-right: 5px;
#> border-top-style: double;
#> border-top-width: 6px;
#> border-top-color: #D3D3D3;
#> }
#>
#> #xcqmhqajet .gt_striped {
#> background-color: rgba(128, 128, 128, 0.05);
#> }
#>
#> #xcqmhqajet .gt_table_body {
#> border-top-style: solid;
#> border-top-width: 2px;
#> border-top-color: #D3D3D3;
#> border-bottom-style: solid;
#> border-bottom-width: 2px;
#> border-bottom-color: #D3D3D3;
#> }
#>
#> #xcqmhqajet .gt_footnotes {
#> color: #333333;
#> background-color: #FFFFFF;
#> border-bottom-style: none;
#> border-bottom-width: 2px;
#> border-bottom-color: #D3D3D3;
#> border-left-style: none;
#> border-left-width: 2px;
#> border-left-color: #D3D3D3;
#> border-right-style: none;
#> border-right-width: 2px;
#> border-right-color: #D3D3D3;
#> }
#>
#> #xcqmhqajet .gt_footnote {
#> margin: 0px;
#> font-size: 90%;
#> padding-left: 4px;
#> padding-right: 4px;
#> padding-left: 5px;
#> padding-right: 5px;
#> }
#>
#> #xcqmhqajet .gt_sourcenotes {
#> color: #333333;
#> background-color: #FFFFFF;
#> border-bottom-style: none;
#> border-bottom-width: 2px;
#> border-bottom-color: #D3D3D3;
#> border-left-style: none;
#> border-left-width: 2px;
#> border-left-color: #D3D3D3;
#> border-right-style: none;
#> border-right-width: 2px;
#> border-right-color: #D3D3D3;
#> }
#>
#> #xcqmhqajet .gt_sourcenote {
#> font-size: 90%;
#> padding-top: 4px;
#> padding-bottom: 4px;
#> padding-left: 5px;
#> padding-right: 5px;
#> }
#>
#> #xcqmhqajet .gt_left {
#> text-align: left;
#> }
#>
#> #xcqmhqajet .gt_center {
#> text-align: center;
#> }
#>
#> #xcqmhqajet .gt_right {
#> text-align: right;
#> font-variant-numeric: tabular-nums;
#> }
#>
#> #xcqmhqajet .gt_font_normal {
#> font-weight: normal;
#> }
#>
#> #xcqmhqajet .gt_font_bold {
#> font-weight: bold;
#> }
#>
#> #xcqmhqajet .gt_font_italic {
#> font-style: italic;
#> }
#>
#> #xcqmhqajet .gt_super {
#> font-size: 65%;
#> }
#>
#> #xcqmhqajet .gt_footnote_marks {
#> font-style: italic;
#> font-weight: normal;
#> font-size: 75%;
#> vertical-align: 0.4em;
#> }
#>
#> #xcqmhqajet .gt_asterisk {
#> font-size: 100%;
#> vertical-align: 0;
#> }
#>
#> #xcqmhqajet .gt_indent_1 {
#> text-indent: 5px;
#> }
#>
#> #xcqmhqajet .gt_indent_2 {
#> text-indent: 10px;
#> }
#>
#> #xcqmhqajet .gt_indent_3 {
#> text-indent: 15px;
#> }
#>
#> #xcqmhqajet .gt_indent_4 {
#> text-indent: 20px;
#> }
#>
#> #xcqmhqajet .gt_indent_5 {
#> text-indent: 25px;
#> }
#> </style>
#> <table class="gt_table">
#> <thead class="gt_header">
#> <tr>
#> <td colspan="7" class="gt_heading gt_title gt_font_normal gt_bottom_border" style>Fixed Design under AHR Method<sup class="gt_footnote_marks">1</sup></td>
#> </tr>
#>
#> </thead>
#> <thead class="gt_col_headings">
#> <tr>
#> <th class="gt_col_heading gt_columns_bottom_border gt_left" rowspan="1" colspan="1" scope="col">Design</th>
#> <th class="gt_col_heading gt_columns_bottom_border gt_right" rowspan="1" colspan="1" scope="col">N</th>
#> <th class="gt_col_heading gt_columns_bottom_border gt_right" rowspan="1" colspan="1" scope="col">Events</th>
#> <th class="gt_col_heading gt_columns_bottom_border gt_right" rowspan="1" colspan="1" scope="col">Time</th>
#> <th class="gt_col_heading gt_columns_bottom_border gt_right" rowspan="1" colspan="1" scope="col">Bound</th>
#> <th class="gt_col_heading gt_columns_bottom_border gt_right" rowspan="1" colspan="1" scope="col">alpha</th>
#> <th class="gt_col_heading gt_columns_bottom_border gt_right" rowspan="1" colspan="1" scope="col">Power</th>
#> </tr>
#> </thead>
#> <tbody class="gt_table_body">
#> <tr><td class="gt_row gt_left">AHR</td>
#> <td class="gt_row gt_right">463.078</td>
#> <td class="gt_row gt_right">324.7077</td>
#> <td class="gt_row gt_right">36</td>
#> <td class="gt_row gt_right">1.959964</td>
#> <td class="gt_row gt_right">0.025</td>
#> <td class="gt_row gt_right">0.9</td></tr>
#> </tbody>
#>
#> <tfoot class="gt_footnotes">
#> <tr>
#> <td class="gt_footnote" colspan="7"><sup class="gt_footnote_marks">1</sup> Power computed with average hazard ratio method.</td>
#> </tr>
#> </tfoot>
#> </table>
#> </div>
# ------------------------- #
# FH #
# ------------------------- #
# under fixed power
fixed_design(
x = "FH",
alpha = alpha, power = 1 - beta,
enrollRates = enrollRates, failRates = failRates,
studyDuration = studyDuration, ratio = ratio
) %>%
summary() %>%
as_gt()
#> <div id="lmyvxhzpvc" style="overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
#> <style>html {
#> font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI', Roboto, Oxygen, Ubuntu, Cantarell, 'Helvetica Neue', 'Fira Sans', 'Droid Sans', Arial, sans-serif;
#> }
#>
#> #lmyvxhzpvc .gt_table {
#> display: table;
#> border-collapse: collapse;
#> margin-left: auto;
#> margin-right: auto;
#> color: #333333;
#> font-size: 16px;
#> font-weight: normal;
#> font-style: normal;
#> background-color: #FFFFFF;
#> width: auto;
#> border-top-style: solid;
#> border-top-width: 2px;
#> border-top-color: #A8A8A8;
#> border-right-style: none;
#> border-right-width: 2px;
#> border-right-color: #D3D3D3;
#> border-bottom-style: solid;
#> border-bottom-width: 2px;
#> border-bottom-color: #A8A8A8;
#> border-left-style: none;
#> border-left-width: 2px;
#> border-left-color: #D3D3D3;
#> }
#>
#> #lmyvxhzpvc .gt_heading {
#> background-color: #FFFFFF;
#> text-align: center;
#> border-bottom-color: #FFFFFF;
#> border-left-style: none;
#> border-left-width: 1px;
#> border-left-color: #D3D3D3;
#> border-right-style: none;
#> border-right-width: 1px;
#> border-right-color: #D3D3D3;
#> }
#>
#> #lmyvxhzpvc .gt_title {
#> color: #333333;
#> font-size: 125%;
#> font-weight: initial;
#> padding-top: 4px;
#> padding-bottom: 4px;
#> padding-left: 5px;
#> padding-right: 5px;
#> border-bottom-color: #FFFFFF;
#> border-bottom-width: 0;
#> }
#>
#> #lmyvxhzpvc .gt_subtitle {
#> color: #333333;
#> font-size: 85%;
#> font-weight: initial;
#> padding-top: 0;
#> padding-bottom: 6px;
#> padding-left: 5px;
#> padding-right: 5px;
#> border-top-color: #FFFFFF;
#> border-top-width: 0;
#> }
#>
#> #lmyvxhzpvc .gt_bottom_border {
#> border-bottom-style: solid;
#> border-bottom-width: 2px;
#> border-bottom-color: #D3D3D3;
#> }
#>
#> #lmyvxhzpvc .gt_col_headings {
#> border-top-style: solid;
#> border-top-width: 2px;
#> border-top-color: #D3D3D3;
#> border-bottom-style: solid;
#> border-bottom-width: 2px;
#> border-bottom-color: #D3D3D3;
#> border-left-style: none;
#> border-left-width: 1px;
#> border-left-color: #D3D3D3;
#> border-right-style: none;
#> border-right-width: 1px;
#> border-right-color: #D3D3D3;
#> }
#>
#> #lmyvxhzpvc .gt_col_heading {
#> color: #333333;
#> background-color: #FFFFFF;
#> font-size: 100%;
#> font-weight: normal;
#> text-transform: inherit;
#> border-left-style: none;
#> border-left-width: 1px;
#> border-left-color: #D3D3D3;
#> border-right-style: none;
#> border-right-width: 1px;
#> border-right-color: #D3D3D3;
#> vertical-align: bottom;
#> padding-top: 5px;
#> padding-bottom: 6px;
#> padding-left: 5px;
#> padding-right: 5px;
#> overflow-x: hidden;
#> }
#>
#> #lmyvxhzpvc .gt_column_spanner_outer {
#> color: #333333;
#> background-color: #FFFFFF;
#> font-size: 100%;
#> font-weight: normal;
#> text-transform: inherit;
#> padding-top: 0;
#> padding-bottom: 0;
#> padding-left: 4px;
#> padding-right: 4px;
#> }
#>
#> #lmyvxhzpvc .gt_column_spanner_outer:first-child {
#> padding-left: 0;
#> }
#>
#> #lmyvxhzpvc .gt_column_spanner_outer:last-child {
#> padding-right: 0;
#> }
#>
#> #lmyvxhzpvc .gt_column_spanner {
#> border-bottom-style: solid;
#> border-bottom-width: 2px;
#> border-bottom-color: #D3D3D3;
#> vertical-align: bottom;
#> padding-top: 5px;
#> padding-bottom: 5px;
#> overflow-x: hidden;
#> display: inline-block;
#> width: 100%;
#> }
#>
#> #lmyvxhzpvc .gt_group_heading {
#> padding-top: 8px;
#> padding-bottom: 8px;
#> padding-left: 5px;
#> padding-right: 5px;
#> color: #333333;
#> background-color: #FFFFFF;
#> font-size: 100%;
#> font-weight: initial;
#> text-transform: inherit;
#> border-top-style: solid;
#> border-top-width: 2px;
#> border-top-color: #D3D3D3;
#> border-bottom-style: solid;
#> border-bottom-width: 2px;
#> border-bottom-color: #D3D3D3;
#> border-left-style: none;
#> border-left-width: 1px;
#> border-left-color: #D3D3D3;
#> border-right-style: none;
#> border-right-width: 1px;
#> border-right-color: #D3D3D3;
#> vertical-align: middle;
#> }
#>
#> #lmyvxhzpvc .gt_empty_group_heading {
#> padding: 0.5px;
#> color: #333333;
#> background-color: #FFFFFF;
#> font-size: 100%;
#> font-weight: initial;
#> border-top-style: solid;
#> border-top-width: 2px;
#> border-top-color: #D3D3D3;
#> border-bottom-style: solid;
#> border-bottom-width: 2px;
#> border-bottom-color: #D3D3D3;
#> vertical-align: middle;
#> }
#>
#> #lmyvxhzpvc .gt_from_md > :first-child {
#> margin-top: 0;
#> }
#>
#> #lmyvxhzpvc .gt_from_md > :last-child {
#> margin-bottom: 0;
#> }
#>
#> #lmyvxhzpvc .gt_row {
#> padding-top: 8px;
#> padding-bottom: 8px;
#> padding-left: 5px;
#> padding-right: 5px;
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#> <tr>
#> <td colspan="7" class="gt_heading gt_title gt_font_normal gt_bottom_border" style>Fixed Design under Fleming-Harrington Method<sup class="gt_footnote_marks">1</sup></td>
#> </tr>
#>
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#> <thead class="gt_col_headings">
#> <tr>
#> <th class="gt_col_heading gt_columns_bottom_border gt_left" rowspan="1" colspan="1" scope="col">Design</th>
#> <th class="gt_col_heading gt_columns_bottom_border gt_right" rowspan="1" colspan="1" scope="col">N</th>
#> <th class="gt_col_heading gt_columns_bottom_border gt_right" rowspan="1" colspan="1" scope="col">Events</th>
#> <th class="gt_col_heading gt_columns_bottom_border gt_right" rowspan="1" colspan="1" scope="col">Time</th>
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#> <th class="gt_col_heading gt_columns_bottom_border gt_right" rowspan="1" colspan="1" scope="col">Power</th>
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#> <tr><td class="gt_row gt_left">FH</td>
#> <td class="gt_row gt_right">355.5725</td>
#> <td class="gt_row gt_right">249.3255</td>
#> <td class="gt_row gt_right">36</td>
#> <td class="gt_row gt_right">1.959964</td>
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#> <td class="gt_footnote" colspan="7"><sup class="gt_footnote_marks">1</sup> Power for Fleming-Harrington test FH(0, 0.5) using method of Yung and Liu.</td>
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